Recent GGSB Student Publications

McNerney ME, Brown CD, Wang X, Bartom ET, Karmakar S, Bandlamudi C, Yu S, Ko J, Sandall BP, Stricker T, Anastasi J, Grossman RL, Cunningham JM, Le Beau MM, White KP. (2013) CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia. Blood. 121:975-83.

Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL. (2014) Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets. J Am Med Inform Assoc.21:969-75..

Blischak, J. D. et al. Mycobacterial infection induces a specific human innate immune response. Sci. Rep. 5, 16882; doi: 10.1038/srep16882 (2015).

Gamazon ER, Wheeler HE, Shah KP, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC, Nicolae DL, Cox NJ, Im HK: A gene-based association method for mapping traits using reference transcriptome data. Nat Genet 2015:1–10

Karasov TL, Kniskern JM, Gao L, Deyoung BJ, Ding, J, Dubiella U, Lastra RO, Nallu S, Roux F, Innes RW, Barrett LG, Hudson RR, Bergelson J. The long-term maintenance of a resistance polymorphism through diffuse interactions. Nature 2014 Aug 28;512(7515):436-40. doi: 10.1038/nature13439. Epub 2014 Jul 6.

Sanders J, Biron, D. (2014). The importance of waiting. Elife (Cambridge). 3:e03754

Sanders J, Nagy S, Fetterman G, Wright C, Treinin M, Biron D. (2013). The Caenorhabditis elegans interneuron ALA is (also) a high-threshold mechanosensor. BMC Neurosci. 14:156.

van de Geijn B, McVicker G, Gilad Y, Pritchard JK. WASP: allele-specific software for robust molecular quantitative trait locus discovery. Nat Methods. 2015 Nov;12(11):1061-3. doi: 10.1038/nmeth.3582. Epub 2015 Sep 14.

Meyer WK, Venkat A, Kermany AR, van de Geijn B, Zhang S, Przeworski M. Evolutionary history inferred from the de novo assembly of a nonmodel organism, the blue-eyed black lemur. Mol Ecol. 2015 Sep;24(17):4392-405. doi: 10.1111/mec.13327. Epub 2015 Aug 24.

McVicker G, van de Geijn B, Degner DF, Cain CE, Banovich NE, Raj A, Lewellen N, Myrthil M, Gilad Y, Pritchard JK. (2013) Identification of genetic variants that affect histone modifications in human cells. Science. 342:747-9.

Banovich NE, Lan X, McVicker G, van de Geijn B, Degner JF, Blischak JD, Roux J, Pritchard JK, Gilad Y. (2014) Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels. PLoS Genetics. 10(9):e1004663.

Cibranovski MD, Zhang YE, Kemkemer C, VanKuren NW, Lopes HF, Karr TL, Long M. (2012) Segmental dataset and whole body expression data do not support the hypothesis that non-­‐random movement is an intrinsic property of Drosophila retrogenes. BMC Evol Biol. 12:169.

Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L. (2014) A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Res. 24:629-38.

VanKuren NW, Vibranovski MD. (2014) A novel dataset for identifying sex-biased genes in Drosophila. J Genomics. 2:64-7.

Long M, Vankuren NW, Chen S, Vibranovski MD. (2013) New Gene Evolution: Little Did We Know. Annu Rev Genet. 47:307-33